Quantum chemical prediction of vibrational spectra of large molecular systems with radical or metallic electronic structure

Significance Statement

Raman spectroscopy as well as vibrational infrared spectroscopy is of ultimate importance in describing properties and structural geometries of nanostructures. Tackling multiradical and metallic systems in particular, using quantum chemical methods, proves to be very difficult. The problem originates from the fact that the single-reference wave functions lacks the capacity to suitably characterize such complicated electronic configurations. Although there are models that have been developed, and are powerful in this context, their application is computationally very demanding.

A conceptually more simple yet efficient solution for extended molecular systems with complicated electronic structure is associated with the use of fractional occupation numbers for the open-shell molecular orbitals. Although much efforts have been devoted towards the use of fractional occupation numbers in quantum chemical methods, geometrical second-order derivatives that include such fractional occupation numbers are yet to be developed. For this reason, theoretical spectroscopic analyses of open-shell molecular systems are very limited and restricted to small molecular systems.

In a recent research published in Chemical Physics Letters, Dr. Yoshio Nishimoto and Professor Stephan Irle both at Nagoya University in Japan derived, for the first time, a geometrical second-order derivative of the Mermin free energy function for the density-functional tight-binding (DFTB) approach. Their extension was applicable for all spin-restricted wave functions, which includes multi-radical, radical and metallic systems.

The authors implemented the fractional occupation number DFTB approach with energy and geometrical first and second order derivatives into a version of the GAMESS-US program package. They adopted an electron density convergence criterion of 10-9 for all numerical derivatives and 10-12 for all other computations. They optimized all structures with maximum and root mean square gradient thresholds of 10-9 and 1/3×10-9, respectively.

The authors employed and tested two existing sets of DFTB parameters; one was the “mio” set while the other was “slkoopt”. The convergence of the equations was achieved when the maximum difference of the Mulliken population derivatives between consecutive cycles was below 10-6. However, the authors observed that the tightening thresholds did not yield any change in the observed results. They computed the Raman activities by calculating the atomic forces and the second-order derivatives based on a finite electric field.

The applicability of the developed model was tested for nitronyl nitroxide radical systems. However, the orbital occupation of the singly occupied molecular orbital was exactly one, irrespective of the molecular structure.

Using traditional, first principles density functional theory (DFT) overestimated the vibrational frequencies. Therefore, the authors scaled DFT wavenumbers by 0.976. For the DFTB frequencies, the authors used scaling factors of 0.952 and 0.959 for ‘mio’ and ‘slkoopt’, respectively. This was in a bid to minimize root mean square deviations for the two sets.

The authors recorded a root mean square deviation of 67.56 cm-1 for the scaled DFT approach. The unscaled DFTB approach yielded root mean square deviations of 79.45 and 68.85 cm-1 for the ‘mio’ and ‘slkoopt’ parameters respectively, hence are comparable in accuracy with DFT but about three orders of magnitude faster. The newly introduced program is, therefore, compatible with computer systems with over 3000 basis functions, or roughly more than 1000 atoms. A relevant and preceding study about the computation of non-resonance Raman activity spectra is also published in The Journal of Chemical Physics.

Quantum chemical prediction of vibrational spectra of large molecular systems with radical or metallic electronic structure - advances in engineering

About the author

Stephan Irle has performed research in quantum chemistry and computational nanomaterials simulations in Germany, Austria, the United States, and Japan. He obtained his PhD from the University of Vienna in 1997 and tenure at Nagoya University in 2011, where he became full professor and principal investigator at the Institute of Transformative Bio-Molecules (WPI-ITbM). Recently, he accepted a computational chemistry position at Oak Ridge National Laboratory in the United States.

The specialty of Stephan Irle is the quantum chemical molecular dynamics (QM/MD) simulation of complex chemical systems using approximate density functional theory. Target areas are amorphous or polymer materials, excited states of large molecules, ionic liquids, biomolecules, and transition metal cluster compounds. Complementary studies of chemical reactions and molecular properties, and the development of methodologies for QM/MD simulations accompany this research.

He published more than 200 publications in peer-reviewed journals, ~40 book chapters and conference proceedings, and 2 books. His papers received about 4300 citations and his current h-index is 36. The research papers were highlighted ~40+ times during the past 5 years. Stephan Irle gave more than 40 keynote and invited talks at international conferences during the past 5 years.

About the author

Yoshio Nishimoto obtained his Doctor of Science under the supervision of Prof. Stephan Irle at Nagoya University in 2015. He started his career in the same year at Fukui Institute for Fundamental Chemistry (FIFC), Kyoto University, as an FIFC fellow. He was then promoted to Program-Specific Assistant Professor (Research Associate) at FIFC in 2016.

His research interest includes analytic derivative techniques and large-scale quantum chemical calculations using the density-functional tight-binding method. His implementation is available as a part of GAMESS (US).


Yoshio Nishimoto1,2 and Stephan Irle1,3. Quantum chemical prediction of vibrational spectra of large molecular systems with radical or metallic electronic structure. Chemical Physics Letters, volume 667 (2017), pages 317–321.

Show Affiliations
  1. Department of Chemistry, Graduate School of Science, Nagoya University, Nagoya 464-8602, Japan
  2. Fukui Institute for Fundamental Chemistry, Kyoto University, 34-4 Takano Nishihiraki-cho, Sakyo-ku, Kyoto 606-8103, Japan
  3. Institute of Transformative Bio-Molecules (WPI-ITbM), Nagoya University, Nagoya 464-8602, Japan


Go To Chemical Physics Letters

Yoshio Nishimoto. Analytic hyperpolarizability and polarizability derivative with fractional occupation numbers for large extended systems. The Journal of Chemical Physics, volume 146 (2017), page 084101.

Go To The Journal of Chemical Physics




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